Publications & Conferences

Interpretable Causal Representation Learning for Biological Data in the Pathway Space

Jesus de la Fuente Cedeño, Robert Lehmann, Carlos Ruiz-Arenas, Jan Voges, Irene Marín-Goñi, Xabier Martinez de Morentin, David Gomez-Cabrero, Idoia Ochoa, Jesper Tegnér, Vincenzo Lagani, Mikel Hernaez

The Thirteenth International Conference on Learning Representations (ICLR 2025)

NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores

Carlos Ruiz-Arenas , Irene Marín-Goñi , Liewei Wang , Idoia Ochoa , Luis A Pérez-Jurado , Mikel Hernaez

Nucleic Acids Research, Volume 52, Issue 9, Page e44

Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions

Charles Blatti, Jesús de la Fuente, Huanyao Gao, Irene Marín-Goñi, Zikun Chen, Sihai D Zhao, Winston Tan, Richard Weinshilboum, Krishna R Kalari, Liewei Wang, Mikel Hernaez

Cancer Research (2023) 83 (8): 1361–1380.